您的位置: 首页 > 2022年3月 第52卷 第2期 > 文字全文
2023年7月 第38卷 第7期11
目录

基因芯片初步探讨乳腺癌转移相关蛋白Nucleobindin-2介导的信号通路

Study of breast cancer metastasis associated protein nucleobindin-2 mediated signal pathway by gene chip

来源期刊: 广州医药 | 56-67 发布时间:2022-04-12 收稿时间:2025/11/13 18:24:08 阅读量:24
作者:
关键词:
乳腺癌通路基因芯片核结合蛋白2
breast cancerpathwaygene chipnucleobindin-2
DOI:
10.3969/j.issn.1000-8535.2022.02.013
收稿时间:
2021-09-23 
修订日期:
 
接收日期:
 
引用总数:
0  
目的 探讨核结合蛋白2(NUCB2)介导的下游信号分子和通路,为阐明NUCB2在乳腺癌中的功能提供依据。方法 构建NUCB2-RNAi慢病毒载体,感染MDA-MB-231细胞株。然后将MDA-MB-231分为阴性对照病毒感染细胞组(NC组)、感染NUCB2基因shRNA病毒细胞组(KD组),用Affymetrix基因表达谱芯片对NUCB2下游基因进行筛选,并对所有数据进行独创性通路分析(IPA)分析。用qPCR测定mRNA水平。统计采用SPSS 20.0软件。结果 Path-Array研究筛选了KD组与NC组的差异基因,其中上调基因186个,下调基因356个,部分差异表达基因的检测表明,这些基因的mRNA水平与Path-Array筛选结果一致。IPA分析显示,经典途径中差异表达基因的显著富集表明胆固醇生物合成的超途径被显著抑制。上游调节因子分析显示了所有不同表达基因的上游调节因子,包括转录因子、细胞因子、小RNA、受体、激酶、化学分子和药物。疾病和功能差异表达基因的显著丰富表明,与NUCB2相关的差异表达基因与41种疾病和功能显著相关,更多与癌症、组织损伤和异常相关。结论 NUCB2的功能涉及多种基因和多种信号通路。
Objective In order to further explore the downstream signal molecules and pathways mediated by nucleobindin-2 (NUCB2), to provide a basis for elucidating the significance of NUCB2 in breast cancer. Method NUCB2-RNAi lentivirus vector was constructed and infecting MDA-MB-231 cell line.Then MDA-MB-231 cells were divived into two group, cells with negative control virus infection (NC group) and cells infected with NUCB2 gene shRNA virus (KD group). NUCB2 downstream gene screening was conducted by Affymetrix gene expression profiling Path-Array chip and all data were analyzed by ingenuity pathway analysis (IPA). The mRNA level was detected by qPCR. SPSS 20.0 software was used for statistics. Results Path-Array study screened out differential genes between KD and NC group which the number of up-regulated genes was 186, the number of down-regulated genes was 356.Detection of some differentially expressed genes showed that the mRNA levels of these genes were consistent with the results of Path-Array screening.IPA analysis revealed that significant enrichment of differentially expressed genes in the classical pathway showed superpathway of cholesterol biosynthesis was significantly inhibited.The upstream regulatory factor analysis showed the upstream regulatory factors of all the differentially expressed genes, including transcription factors, cytokine, small RNA, receptors, kinases, chemical molecules and drugs.The significant enrichment of differentially expressed genes in disease and function showed that NUCB2 associated differentially expressed genes were significantly related with 41 diseases and functions, which were more related with cancer, organismal injury and abnormities. Conclusion The function of NUCB2 involved multiple genes and multiple signaling pathways.
1、 KAN J Y, YEN M C, WANG J Y, et al. Nesfatin-1/Nucleobindin-2 enhances cell migration, invasion, and epithelial-mesenchymal transition via LKB1/AMPK/TORC1/ZEB1 pathways in colon cancer[J].Oncotarget, 2016, 7(21):31336-31349. KAN J Y, YEN M C, WANG J Y, et al. Nesfatin-1/Nucleobindin-2 enhances cell migration, invasion, and epithelial-mesenchymal transition via LKB1/AMPK/TORC1/ZEB1 pathways in colon cancer[J].Oncotarget, 2016, 7(21):31336-31349.
2、 TAKAGI K, MIKI Y, TANAKA S,et al. Nucleobindin 2 (NUCB2) in human endometrial carcinoma: a potent prognostic factor associated with cell proliferation and migration[J].Endocr J, 2016, 63(3):287-299. TAKAGI K, MIKI Y, TANAKA S,et al. Nucleobindin 2 (NUCB2) in human endometrial carcinoma: a potent prognostic factor associated with cell proliferation and migration[J].Endocr J, 2016, 63(3):287-299.
3、 RAMANJANEYA M, TAN B K, RUCINSKI M, et al. Nesfatin-1 inhibits proliferation and enhances apoptosis of human adrenocortical H295R cells[J].J Endocrinol.2015, 226(1):1-11. RAMANJANEYA M, TAN B K, RUCINSKI M, et al. Nesfatin-1 inhibits proliferation and enhances apoptosis of human adrenocortical H295R cells[J].J Endocrinol.2015, 226(1):1-11.
4、 TANG C H, FU X J, XU X L, et al. The anti-inflammatory and anti-apoptotic effects of nesfatin-1 in the traumatic rat brain[J].Peptides,2012, 36(1):39-45. TANG C H, FU X J, XU X L, et al. The anti-inflammatory and anti-apoptotic effects of nesfatin-1 in the traumatic rat brain[J].Peptides,2012, 36(1):39-45.
5、 de ALBA E, TJANDRA N.Structural studies on the Ca2+-binding domain of human nucleobindin (calnuc)[J].Biochemistry.2004, 43(31):10039-10049. de ALBA E, TJANDRA N.Structural studies on the Ca2+-binding domain of human nucleobindin (calnuc)[J].Biochemistry.2004, 43(31):10039-10049.
6、 IWASAKI Y, NAKABAYASHI H, KAKEI M, et al.Nesfatin-1 evokes Ca2+ signaling in isolated vagal afferent neurons via Ca2+ influx through N-type channels[J].Biochem Biophys Res Commun, 2009, 390(3):958-962. IWASAKI Y, NAKABAYASHI H, KAKEI M, et al.Nesfatin-1 evokes Ca2+ signaling in isolated vagal afferent neurons via Ca2+ influx through N-type channels[J].Biochem Biophys Res Commun, 2009, 390(3):958-962.
7、 OZCAN M, GOK Z B, KACAR E, et al. Nesfatin-1 increases intracellular calcium concentration by protein kinase C activation in cultured rat dorsal root ganglion neurons[J].Neurosci Lett, 2016(619):177-181. OZCAN M, GOK Z B, KACAR E, et al. Nesfatin-1 increases intracellular calcium concentration by protein kinase C activation in cultured rat dorsal root ganglion neurons[J].Neurosci Lett, 2016(619):177-181.
8、 VALENCIA C A, COTTEN S W, DUAN J, et al.Modulation of nucleobindin-1 and nucleobindin-2 by caspases[J].FEBS Lett, 2008, 582(2):286-290. VALENCIA C A, COTTEN S W, DUAN J, et al.Modulation of nucleobindin-1 and nucleobindin-2 by caspases[J].FEBS Lett, 2008, 582(2):286-290.
9、 ISHIDA E, HASHIMOTO K, SHIMIZU H, et al.Nesfatin-1 induces the phosphorylation levels of cAMP response element-binding protein for intracellular signaling in a neural cell line[J].PLoS One, 2012;7(12):e50918. ISHIDA E, HASHIMOTO K, SHIMIZU H, et al.Nesfatin-1 induces the phosphorylation levels of cAMP response element-binding protein for intracellular signaling in a neural cell line[J].PLoS One, 2012;7(12):e50918.
10、 XU Y, PANG X, DONG M, et al. Nesfatin-1 inhibits ovarian epithelial carcinoma cell proliferation in vitro[J].Biochem Biophys Res Commun, 2013, 440(4): 467-472. XU Y, PANG X, DONG M, et al. Nesfatin-1 inhibits ovarian epithelial carcinoma cell proliferation in vitro[J].Biochem Biophys Res Commun, 2013, 440(4): 467-472.
11、 KAN J Y, YEN M C, WANG J Y, et al. Nesfatin-1/Nucleobindin-2 enhances cell migration, invasion, and epithelial-mesenchymal transition via LKB1/AMPK/TORC1/ZEB1 pathways in colon cancer[J].Oncotarget, 2016, 7(21):31336-31349. KAN J Y, YEN M C, WANG J Y, et al. Nesfatin-1/Nucleobindin-2 enhances cell migration, invasion, and epithelial-mesenchymal transition via LKB1/AMPK/TORC1/ZEB1 pathways in colon cancer[J].Oncotarget, 2016, 7(21):31336-31349.
12、 LIANG Z, ZHONG J G, HE G C, et al. Identification of nucleobindin-2 as a potential biomarker for breast cancer metastasis using iTRAQ-based quantitative proteomic analysis[J].J Cancer, 2017,8(15): 3062-3069. LIANG Z, ZHONG J G, HE G C, et al. Identification of nucleobindin-2 as a potential biomarker for breast cancer metastasis using iTRAQ-based quantitative proteomic analysis[J].J Cancer, 2017,8(15): 3062-3069.
上一篇
下一篇
出版者信息








《广州医药》公众号
目录