Objective Children with nervous system diseases needed transfer between hospitals in Guangzhou women and children medical center from 2014 to 2016 was analyzed by the epidemiological method. To explore the safety of the critically ill children with transshipment in diseases of the nervous system. Methods 986 children with nervous system diseases needed transfer between hospitals was given a retrospective analysis. Results In 986 cases transit there were no deaths, male to female ratiowas 1.91∶1; referral of children's age distribution was mainly concentrates in 1 months to 2 years 11 months old, accounting for 56.64%; there was seasonal difference with referral children; 93.96% of the disease were “tic check for” and “intracranial infection”; 81.12% of children of the referral transfer within 150 km radius. Conclusion Critically ill children with nervous system disease referred to a tertiary hospital for treatment is necessary because of the grass-roots hospitals restricted by medical technology and equipments. According to the epidemiological characteristics of transport of critically ill children with nervous system disease, transit center should take emergency measures to arrive timely, safe and effective among hospitals.